projects / packages / R-GenomicFeatures.git / blame
| Commit | Line | Data |
|---|---|---|
| a02be990 JR |
1 | %define packname GenomicFeatures |
| 2 | ||
| 3 | Summary: Tools for making and manipulating transcript centric annotations | |
| 4 | Name: R-%{packname} | |
| a7f320c2 | 5 | Version: 1.14.2 |
| a02be990 JR |
6 | Release: 1 |
| 7 | License: Artistic 2.0 | |
| 8 | Group: Applications/Math | |
| 9 | Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| a7f320c2 JR |
10 | # Source0-md5: aa2f5d703ebcae45963fafcf97fee42e |
| 11 | URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicFeatures.html | |
| a02be990 JR |
12 | BuildRequires: R |
| 13 | BuildRequires: R-AnnotationDbi >= 1.19.36 | |
| 14 | BuildRequires: R-BiocGenerics | |
| 15 | BuildRequires: R-GenomicRanges >= 1.11.11 | |
| 16 | BuildRequires: R-IRanges-devel >= 1.17.13 | |
| 17 | BuildRequires: R-Biostrings | |
| 18 | BuildRequires: R-rtracklayer | |
| 19 | BuildRequires: R-biomaRt | |
| 20 | BuildRequires: R-cran-RCurl | |
| 21 | BuildRequires: texlive-latex | |
| 22 | Requires: R | |
| 23 | Requires: R-AnnotationDbi >= 1.19.36 | |
| 24 | Requires: R-BiocGenerics | |
| 25 | Requires: R-GenomicRanges >= 1.11.11 | |
| 26 | Requires: R-IRanges >= 1.17.13 | |
| 27 | Requires: R-Biostrings | |
| 28 | Requires: R-rtracklayer | |
| 29 | Requires: R-biomaRt | |
| 30 | Requires: R-cran-RCurl | |
| 31 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 32 | ||
| 33 | %description | |
| 34 | A set of tools and methods for making and manipulating transcript | |
| 35 | centric annotations. With these tools the user can easily download | |
| 36 | the genomic locations of the transcripts, exons and cds of a given | |
| 37 | organism, from either the UCSC Genome Browser or a BioMart database | |
| 38 | (more sources will be supported in the future). This information is | |
| 39 | then stored in a local database that keeps track of the relationship | |
| 40 | between transcripts, exons, cds and genes. Flexible methods are | |
| 41 | provided for extracting the desired features in a convenient format. | |
| 42 | ||
| 43 | %prep | |
| 44 | %setup -q -c -n %{packname} | |
| 45 | ||
| 46 | %build | |
| 47 | ||
| 48 | %install | |
| 49 | rm -rf $RPM_BUILD_ROOT | |
| 50 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 51 | ||
| 52 | %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} | |
| 53 | ||
| 54 | %clean | |
| 55 | rm -rf $RPM_BUILD_ROOT | |
| 56 | ||
| 57 | %files | |
| 58 | %defattr(644,root,root,755) | |
| 59 | %dir %{_libdir}/R/library/%{packname}/ | |
| 60 | %doc %{_libdir}/R/library/%{packname}/doc/ | |
| 61 | %doc %{_libdir}/R/library/%{packname}/html/ | |
| 62 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 63 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 64 | %{_libdir}/R/library/%{packname}/INDEX | |
| 65 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 66 | %{_libdir}/R/library/%{packname}/Meta/ | |
| 67 | %{_libdir}/R/library/%{packname}/R/ | |
| 68 | %{_libdir}/R/library/%{packname}/extdata/ | |
| 69 | %{_libdir}/R/library/%{packname}/help/ | |
| 70 | %{_libdir}/R/library/%{packname}/unitTests/ | |
| 71 | %{_libdir}/R/library/%{packname}/script | |
| 72 | %{_libdir}/R/library/%{packname}/txdb-template |