projects / packages / R-DESeq.git / blame
| Commit | Line | Data |
|---|---|---|
| 9071c8bd JR |
1 | %define packname DESeq |
| 2 | ||
| 3 | Summary: Differential gene expression analysis based on the negative binomial distribution | |
| 4 | Name: R-%{packname} | |
| 74efafeb | 5 | Version: 1.14.0 |
| 9071c8bd JR |
6 | Release: 1 |
| 7 | License: GPL v3 | |
| 8 | Group: Applications/Engineering | |
| 9 | Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz | |
| 74efafeb JR |
10 | # Source0-md5: 6df447df70a5c2e1fac6c98540f6b249 |
| 11 | URL: http://bioconductor.org/packages/release/bioc/html/DESeq.html | |
| 9071c8bd JR |
12 | BuildRequires: R |
| 13 | BuildRequires: R-Biobase | |
| 14 | BuildRequires: R-cran-locfit | |
| 15 | BuildRequires: R-genefilter | |
| 16 | BuildRequires: R-geneplotter | |
| 17 | BuildRequires: R-cran-RColorBrewer | |
| 18 | BuildRequires: texlive-latex | |
| 19 | Requires: R | |
| 20 | Requires: R-Biobase | |
| 21 | Requires: R-cran-locfit | |
| 22 | Requires: R-genefilter | |
| 23 | Requires: R-geneplotter | |
| 24 | Requires: R-cran-RColorBrewer | |
| 25 | BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n) | |
| 26 | ||
| 27 | %description | |
| 28 | Estimate variance-mean dependence in count data from high-throughput | |
| 29 | sequencing assays and test for differential expression based on a | |
| 30 | model using the negative binomial distribution. | |
| 31 | ||
| 32 | %prep | |
| 33 | %setup -q -c -n %{packname} | |
| 34 | ||
| 35 | %build | |
| 36 | ||
| 37 | %install | |
| 38 | rm -rf $RPM_BUILD_ROOT | |
| 39 | install -d $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 40 | ||
| 41 | R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library | |
| 42 | ||
| 43 | %clean | |
| 44 | rm -rf $RPM_BUILD_ROOT | |
| 45 | ||
| 46 | %files | |
| 47 | %defattr(644,root,root,755) | |
| 48 | %dir %{_libdir}/R/library/%{packname} | |
| 49 | %doc %{_libdir}/R/library/%{packname}/doc | |
| 50 | %doc %{_libdir}/R/library/%{packname}/html | |
| 51 | %doc %{_libdir}/R/library/%{packname}/DESCRIPTION | |
| 52 | %doc %{_libdir}/R/library/%{packname}/NEWS | |
| 53 | %{_libdir}/R/library/%{packname}/INDEX | |
| 54 | %{_libdir}/R/library/%{packname}/NAMESPACE | |
| 55 | %{_libdir}/R/library/%{packname}/Meta | |
| 56 | %{_libdir}/R/library/%{packname}/R | |
| 57 | %{_libdir}/R/library/%{packname}/help | |
| 58 | %{_libdir}/R/library/%{packname}/extra | |
| 59 | %{_libdir}/R/library/%{packname}/scripts | |
| 60 | %{_libdir}/R/library/%{packname}/CITATION | |
| 61 | %dir %{_libdir}/R/library/%{packname}/libs | |
| 62 | %attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/%{packname}.so |