- new
authorJan Rękorajski <baggins@pld-linux.org>
Fri, 22 Mar 2013 11:15:15 +0000 (12:15 +0100)
committerJan Rękorajski <baggins@pld-linux.org>
Fri, 22 Mar 2013 11:15:15 +0000 (12:15 +0100)
R-BSgenome.spec [new file with mode: 0644]

diff --git a/R-BSgenome.spec b/R-BSgenome.spec
new file mode 100644 (file)
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--- /dev/null
@@ -0,0 +1,62 @@
+%define                packname        BSgenome
+
+Summary:       Infrastructure for Biostrings-based genome data packages
+Name:          R-%{packname}
+Version:       1.26.1
+Release:       1
+License:       Artistic 2.0
+Group:         Applications/Science
+Source0:       http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: c46bfe6388f351c7ee7a034e63fd784d
+URL:           http://bioconductor.org/packages/release/bioc/html/Biobase.html
+BuildRequires: R
+BuildRequires: R-BiocGenerics >= 0.3.2
+BuildRequires: R-IRanges >= 1.13.6
+BuildRequires: R-GenomicRanges >= 1.7.5
+BuildRequires: R-Biostrings >= 2.23.3
+BuildRequires: texlive-latex
+Requires:      R
+Requires:      R-BiocGenerics >= 0.3.2
+Requires:      R-IRanges >= 1.13.6
+Requires:      R-GenomicRanges >= 1.7.5
+Requires:      R-Biostrings >= 2.23.3
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Infrastructure shared by all the Biostrings-based genome data packages.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/libs/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/UnitTests/
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/scripts
+%{_libdir}/R/library/%{packname}/ExpressionSet
+%{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/testClass.R
+%{_libdir}/R/library/%{packname}/NEWS
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html
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