1 %define packname BSgenome
3 Summary: Infrastructure for Biostrings-based genome data packages
8 Group: Applications/Science
9 Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
10 # Source0-md5: c46bfe6388f351c7ee7a034e63fd784d
11 URL: http://bioconductor.org/packages/release/bioc/html/Biobase.html
13 BuildRequires: R-BiocGenerics >= 0.3.2
14 BuildRequires: R-IRanges >= 1.13.6
15 BuildRequires: R-GenomicRanges >= 1.7.5
16 BuildRequires: R-Biostrings >= 2.23.3
17 BuildRequires: texlive-latex
19 Requires: R-BiocGenerics >= 0.3.2
20 Requires: R-IRanges >= 1.13.6
21 Requires: R-GenomicRanges >= 1.7.5
22 Requires: R-Biostrings >= 2.23.3
23 BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
26 Infrastructure shared by all the Biostrings-based genome data packages.
29 %setup -c -q -n %{packname}
34 rm -rf $RPM_BUILD_ROOT
35 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
37 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
40 rm -rf $RPM_BUILD_ROOT
43 %defattr(644,root,root,755)
44 %dir %{_libdir}/R/library/%{packname}
45 %{_libdir}/R/library/%{packname}/INDEX
46 %{_libdir}/R/library/%{packname}/Meta/
47 %{_libdir}/R/library/%{packname}/R/
48 %{_libdir}/R/library/%{packname}/help/
49 %{_libdir}/R/library/%{packname}/libs/
50 %{_libdir}/R/library/%{packname}/NAMESPACE
51 %{_libdir}/R/library/%{packname}/UnitTests/
52 %{_libdir}/R/library/%{packname}/data
53 %{_libdir}/R/library/%{packname}/scripts
54 %{_libdir}/R/library/%{packname}/ExpressionSet
55 %{_libdir}/R/library/%{packname}/CITATION
56 %{_libdir}/R/library/%{packname}/Code
57 %{_libdir}/R/library/%{packname}/extdata
58 %{_libdir}/R/library/%{packname}/testClass.R
59 %{_libdir}/R/library/%{packname}/NEWS
60 %doc %{_libdir}/R/library/%{packname}/doc
61 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
62 %doc %{_libdir}/R/library/%{packname}/html