R-BSgenome.spec

   1 %define         packname        BSgenome
   2
   3 Summary:        Infrastructure for Biostrings-based genome data packages
   4 Name:           R-%{packname}
   5 Version:        1.26.1
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          Applications/Science
   9 Source0:        http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  c46bfe6388f351c7ee7a034e63fd784d
  11 URL:            http://bioconductor.org/packages/release/bioc/html/Biobase.html
  12 BuildRequires:  R
  13 BuildRequires:  R-BiocGenerics >= 0.3.2
  14 BuildRequires:  R-IRanges >= 1.13.6
  15 BuildRequires:  R-GenomicRanges >= 1.7.5
  16 BuildRequires:  R-Biostrings >= 2.23.3
  17 BuildRequires:  texlive-latex
  18 Requires:       R
  19 Requires:       R-BiocGenerics >= 0.3.2
  20 Requires:       R-IRanges >= 1.13.6
  21 Requires:       R-GenomicRanges >= 1.7.5
  22 Requires:       R-Biostrings >= 2.23.3
  23 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  24
  25 %description
  26 Infrastructure shared by all the Biostrings-based genome data packages.
  27
  28 %prep
  29 %setup -c -q -n %{packname}
  30
  31 %build
  32
  33 %install
  34 rm -rf $RPM_BUILD_ROOT
  35 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  36
  37 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  38
  39 %clean
  40 rm -rf $RPM_BUILD_ROOT
  41
  42 %files
  43 %defattr(644,root,root,755)
  44 %dir %{_libdir}/R/library/%{packname}
  45 %{_libdir}/R/library/%{packname}/INDEX
  46 %{_libdir}/R/library/%{packname}/Meta/
  47 %{_libdir}/R/library/%{packname}/R/
  48 %{_libdir}/R/library/%{packname}/help/
  49 %{_libdir}/R/library/%{packname}/libs/
  50 %{_libdir}/R/library/%{packname}/NAMESPACE
  51 %{_libdir}/R/library/%{packname}/UnitTests/
  52 %{_libdir}/R/library/%{packname}/data
  53 %{_libdir}/R/library/%{packname}/scripts
  54 %{_libdir}/R/library/%{packname}/ExpressionSet
  55 %{_libdir}/R/library/%{packname}/CITATION
  56 %{_libdir}/R/library/%{packname}/Code
  57 %{_libdir}/R/library/%{packname}/extdata
  58 %{_libdir}/R/library/%{packname}/testClass.R
  59 %{_libdir}/R/library/%{packname}/NEWS
  60 %doc %{_libdir}/R/library/%{packname}/doc
  61 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  62 %doc %{_libdir}/R/library/%{packname}/html