- new

diff --git a/R-BSgenome.Hsapiens.UCSC.hg19.spec b/R-BSgenome.Hsapiens.UCSC.hg19.spec
new file mode 100644 (file)
index 0000000..aa08e40
--- /dev/null
+++ b/R-BSgenome.Hsapiens.UCSC.hg19.spec
@@ -0,0 +1,61 @@
+# NOTE: this package is NoSource because the file is _enormous_,
+#      and I don't want to pollute distfiles with it - baggins
+
+%define                packname        BSgenome.Hsapiens.UCSC.hg19
+
+Summary:       Homo sapiens (Human) full genome (UCSC version hg19)
+Name:          R-%{packname}
+Version:       1.3.19
+Release:       1
+License:       Artistic 2.0
+Group:         Applications/Science
+Source0:       http://bioconductor.org/packages/release/data/annotation/src/contrib//%{packname}_%{version}.tar.gz
+# NoSource0-md5:       d8cc70ba24b9c320ca45c3dc56f5f9b2
+NoSource:      0
+URL:           http://bioconductor.org/packages/release/bioc/html/Biobase.html
+BuildRequires: R
+BuildRequires: R-BSgenome >= 1.25.4
+BuildRequires: texlive-latex
+Requires:      R
+Requires:      R-BSgenome >= 1.25.4
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009)
+and stored in Biostrings objects.
+
+%prep
+%setup -c -q -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/libs/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/UnitTests/
+%{_libdir}/R/library/%{packname}/data
+%{_libdir}/R/library/%{packname}/scripts
+%{_libdir}/R/library/%{packname}/ExpressionSet
+%{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/Code
+%{_libdir}/R/library/%{packname}/extdata
+%{_libdir}/R/library/%{packname}/testClass.R
+%{_libdir}/R/library/%{packname}/NEWS
+%doc %{_libdir}/R/library/%{packname}/doc
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/html