- new

Changed files:
    MACS.spec -> 1.1

diff --git a/MACS.spec b/MACS.spec
new file mode 100644 (file)
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+++ b/MACS.spec
@@ -0,0 +1,70 @@
+Summary:       Model-based Analysis for ChIP-Seq 
+#Summary(pl.UTF-8):    -
+Name:          MACS
+Version:       1.4.1
+Release:       1
+License:       Artistic
+Group:         Development/Languages/Python
+# user and password are "publicly" visible on the web page (ROT13)
+Source0:       http://macs:chipseq@liulab.dfci.harvard.edu/MACS/src/%{name}-%{version}.tar.gz
+# Source0-md5: 0b6490e37265d485e387b8323e810d3d
+URL:           http://liulab.dfci.harvard.edu/MACS/
+BuildRequires: python-distribute
+BuildRequires: rpm-pythonprov
+BuildRequires: rpmbuild(macros) >= 1.219
+Requires:              python-modules
+BuildArch:     noarch
+BuildRoot:     %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Next generation parallel sequencing technologies made chromatin
+immunoprecipitation followed by sequencing (ChIP-Seq) a popular
+strategy to study genome-wide protein-DNA interactions, while
+creating challenges for analysis algorithms. We present Model-based
+Analysis of ChIP-Seq (MACS) on short reads sequencers such as Genome
+Analyzer (Illumina / Solexa). MACS empirically models the length of
+the sequenced ChIP fragments, which tends to be shorter than
+sonication or library construction size estimates, and uses it
+to improve the spatial resolution of predicted binding sites.
+MACS also uses a dynamic Poisson distribution to effectively capture
+local biases in the genome sequence, allowing for more sensitive and
+robust prediction. MACS compares favorably to existing ChIP-Seq
+peak-finding algorithms, is publicly available open source, and can be
+used for ChIP-Seq with or without control samples.
+
+#%description -l pl.UTF-8
+
+%prep
+%setup -q
+
+# fix #!/usr/bin/env python -> #!/usr/bin/python:
+%{__sed} -i -e '1s,^#!.*python,#!%{__python},' bin/* setup.py
+
+%build
+%{__python} setup.py build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+%{__python} setup.py install \
+       --skip-build \
+       --optimize=2 \
+       --root=$RPM_BUILD_ROOT
+
+%py_ocomp $RPM_BUILD_ROOT%{py_sitescriptdir}
+%py_comp $RPM_BUILD_ROOT%{py_sitescriptdir}
+%py_postclean
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%doc ChangeLog NEW_IN_MACS14 README
+%attr(755,root,root) %{_bindir}/*
+%dir %{py_sitescriptdir}/MACS14
+%dir %{py_sitescriptdir}/MACS14/IO
+%{py_sitescriptdir}/MACS14/*.py[co]
+%{py_sitescriptdir}/MACS14/IO/*.py[co]
+%if "%{py_ver}" > "2.4"
+%{py_sitescriptdir}/MACS-*.egg-info
+%endif