R-GenomicRanges.spec

   1 %define         packname        GenomicRanges
   2
   3 Summary:        Representation and manipulation of genomic intervals
   4 Name:           R-%{packname}
   5 Version:        1.10.2
   6 Release:        1
   7 License:        Artistic 2.0
   8 Group:          Applications/Math
   9 Source0:        http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
  10 # Source0-md5:  04ab6f7c7a9abe309e586193e07415d0
  11 URL:            http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
  12 BuildRequires:  R
  13 BuildRequires:  R-BiocGenerics
  14 BuildRequires:  R-IRanges-devel >= 1.11.26
  15 BuildRequires:  texlive-latex
  16 Requires:       R
  17 Requires:       R-BiocGenerics
  18 Requires:       R-IRanges >= 1.11.26
  19 BuildRoot:      %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
  20
  21 %description
  22 The ability to efficiently store genomic annotations and alignments is
  23 playing a central role when it comes to analyze high-throughput
  24 sequencing data (a.k.a. NGS data). The package defines general purpose
  25 containers for storing genomic intervals as well as more specialized
  26 containers for storing alignments against a reference genome.
  27
  28 %prep
  29 %setup -q -c -n %{packname}
  30
  31 %build
  32 # circular dep on R-Rsamtools
  33 #{_bindir}/R CMD build %{packname}
  34
  35 %install
  36 rm -rf $RPM_BUILD_ROOT
  37 install -d $RPM_BUILD_ROOT%{_libdir}/R/library
  38
  39 %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
  40
  41 %clean
  42 rm -rf $RPM_BUILD_ROOT
  43
  44 %files
  45 %defattr(644,root,root,755)
  46 %dir %{_libdir}/R/library/%{packname}/
  47 %doc %{_libdir}/R/library/%{packname}/doc/
  48 %doc %{_libdir}/R/library/%{packname}/html/
  49 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
  50 %doc %{_libdir}/R/library/%{packname}/NEWS
  51 %{_libdir}/R/library/%{packname}/INDEX
  52 %{_libdir}/R/library/%{packname}/NAMESPACE
  53 %{_libdir}/R/library/%{packname}/Meta/
  54 %{_libdir}/R/library/%{packname}/R/
  55 %{_libdir}/R/library/%{packname}/extdata/
  56 %{_libdir}/R/library/%{packname}/help/
  57 %{_libdir}/R/library/%{packname}/scripts/
  58 %{_libdir}/R/library/%{packname}/unitTests/
  59 %{_libdir}/R/library/%{packname}/libs/